methylseq data analysis using bismark and low alignment rate
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2.1 years ago
Sara ▴ 220

I have methylseq data and used bismark for the analysis. but looking at the bam files, the alignment rate is only 8 %. then I checked the alignment using fastq_screen and got 70% alignment rate. do you know what could be the problem with bismark?

next-gen • 386 views