I have called variants with GRCm38 and annotated with snpeff with in built GRCm38.99.genome. When doing
snpefftomaf.pl NCBI build column in the MAF file is 37?
I checked the header of the VCF and confirmed it was GRCm38 that I used.
Is there a way to check if the NCBI build was detected wrong or if I did use the wrong build?
Thank you again!