Question: Hisat2 / (ERR): hisat2-align exited with value 1
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gravatar for ziziqolo
9 days ago by
ziziqolo10
ziziqolo10 wrote:

Hello I'm trying to use Hisat2 on WSL, and I used -wdp founding location of indexs (hg19 downloaded), fastq file and output.sam. But:

Warning: Could not open read file "/mnt/c/Users/.../trimmed_out.fastq" for reading; skipping...
Error: No input read files were valid
(ERR): hisat2-align exited with value 1

What should I do? Thanks for your reply


Thanks, all things are OK. problem solved.

alignment software error • 61 views
ADD COMMENTlink modified 4 days ago • written 9 days ago by ziziqolo10

Which was your command? Can you share (please)?

ADD REPLYlink written 9 days ago by antonioggsousa1.9k

Thanks, all things are OK. problem solved.

Error was clear originally so I assume once you addressed the issue the problem went way? If you did something else then please post that an answer to provide closure for this thread.

ADD REPLYlink written 4 days ago by GenoMax94k
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