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Question: how to run torrent variant caller on command line ?
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gravatar for Sar
7 weeks ago by
Sar • 0
Sar • 0 wrote:

Hi community ! i will to work with TVC for Variant Calling...do you know how i can run it on command line on ubuntu. i already downloaded it by : sudo apt get-install tvc

thank you.

snp next-gen genome • 120 views
ADD COMMENT • link •
written 7 weeks ago by Sar • 0

do you know how i can run it on command line on ubuntu

yes.

http://updates.iontorrent.com/tvc_standalone/README.txt

ADD REPLY • link written 7 weeks ago by Pierre Lindenbaum ♦ 134k

thank you so much ! do you know what is that : --region-bed and --primer-trim

ADD REPLY • link written 7 weeks ago by Sar • 0

And i don't really understand how to install it because i used only "sudo apt get-install tvc "

ADD REPLY • link modified 7 weeks ago • written 7 weeks ago by Sar • 0

The software installation procedure is already mentioned in the documentation.

ADD REPLY • link written 7 weeks ago by Arup Ghosh ♦ 2.8k

Yees it is installed ! but i don't understand the region bed files and the primer-trim ... it's necessary to running...do you have any idea ?. BTW I'm a beginner in bioinformatics

ADD REPLY • link written 7 weeks ago by Sar • 0
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