Hi everybody!
I have a long list of submitted SNPs (ss) and I would like to convert them to rsid nomenclature. I know I can do this one by one using dbSNP but how can I do this in batch mode?
Thanks!!
If you use the method method below be sure to sign up for and use NCBI_API_KEY. Add in a sleep 2 directive since you are processing thousands of queries.
Have you tried eutills/edirect?
I'm gonna take a look into it, thanks!
Can you provide a couple of examples?
I have a list like this comprising 43.000 ss:
ss68767636
ss68769665
ss68769692
ss68769749
ss68771111
ss68772343
ss68774024
ss68776006
ss68779227
If I search ss68767636 on dbSNP I get -> rs1381888
If you use the method method below be sure to sign up for and use NCBI_API_KEY. Add in a
sleep 2
directive since you are processing thousands of queries.It worked! Thanks a lot!!
Please accept GenoMax's answer below.