Question: decide a threshold to filter samples based on HsMetrics from Picard tools
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gravatar for bio.pelayo
7 weeks ago by
bio.pelayo0
bio.pelayo0 wrote:

Hi all!

This is just a comment to debate. Are there any criteria to decide a threshold to filter samples based on HsMetrics from Picard tools? Data came from Whole Exome Seq. How and why we could establish a threshold? The variables are:

% of SELECTED BASES

% of TARGET BASES AT 30X

MEAN TARGET COVERAGE

Thank you all!!

Papers/Literature will be highly appreciated

sequencing snp • 94 views
ADD COMMENTlink written 7 weeks ago by bio.pelayo0
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