Entering edit mode
3.3 years ago
poet1988
▴
30
Dear, Ńolleagues. I am trying to make a graph based on shared OTUs (from QIIME).
shared_phylotypes.py -i otu_table.biom -o shared_otus.txt
The upset uses binary matrices as input, how I can convert data to work with this package? For simplicity, only 9 values are shown (I actually have 15 sets.). Example data:
Set1 Set2 Set3
Set1 11 0 2
Set2 0 18 0
Set3 2 0 80