Error in stop_if_wrong_length(what, ans_len)
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Entering edit mode
3.3 years ago

Hi I'm trying to analyze a RNA-Seq data that I got via "GDCquery" package. After I ran these codes, I got an error. What should I do? I will be grateful for any help you can provide.

codes:

query <- GDCquery(project = "TARGET-ALL-P2",
                  data.category = "Gene expression",
                  data.type = "Gene expression quantification",
                  legacy = TRUE,
                  platform = "Illumina HiSeq",
                  experimental.strategy = "RNA-Seq")

GDCdownload(query, method = "api")
Data <- GDCprepare(query, summarizedExperiment = TRUE)
error:
oo Reading 202 files
--------------------
|==========================================================|100%                      Completed after 10 s 
--------------------
oo Merging 202 files
--------------------
Accessing grch37.ensembl.org to get gene information
Downloading genome information (try:0) Using: Human genes (GRCh37.p13)
Error in stop_if_wrong_length(what, ans_len) : 
  'ranges' must have the length of the object to construct (1) or length 1
rna-seq R • 1.3k views
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