Entering edit mode
3.7 years ago
amirnavidinia2014
▴
10
Hi I'm trying to analyze a RNA-Seq data that I got via "GDCquery" package. After I ran these codes, I got an error. What should I do? I will be grateful for any help you can provide.
codes:
query <- GDCquery(project = "TARGET-ALL-P2",
data.category = "Gene expression",
data.type = "Gene expression quantification",
legacy = TRUE,
platform = "Illumina HiSeq",
experimental.strategy = "RNA-Seq")
GDCdownload(query, method = "api")
Data <- GDCprepare(query, summarizedExperiment = TRUE)
error:
oo Reading 202 files
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|==========================================================|100% Completed after 10 s
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oo Merging 202 files
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Accessing grch37.ensembl.org to get gene information
Downloading genome information (try:0) Using: Human genes (GRCh37.p13)
Error in stop_if_wrong_length(what, ans_len) :
'ranges' must have the length of the object to construct (1) or length 1