recent Hi-C databases

Question

[Bogdan]

Dear all,

please would you let me know if there are any Hi-C databases that would have collected the 3C interactions reported by individual laboratories, or big consortia such as ENCODE or 4Dnucleome ? thanks a lot,

-- bogdan

Answer 1

[jared.andrews07]

This list on github is a pretty good one in terms of datasets/resources. 3DIV might be a little more what you're after though.

[Bogdan]

thanks a lot, very very helpful !

Answer 2

[kalavattam]

• Data, including 3C-related/derived data, for the 4DNucleome project are here: https://data.4dnucleome.org/
• All data for the ENCODE project are here: https://www.encodeproject.org/search/
• Hi-C data for the ENCODE project are here: https://www.encodeproject.org/search/?type=Experiment&assay_title=Hi-C&status=released