BUSCO version 4.1.4 ValueError
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Entering edit mode
9 months ago
slin023 • 0

Hello, for people who have experience with editing format of dataset and programming, this seems like a simple fix. I am using blobtool to add my busco result, but I ran into some errors:

    Traceback (most recent call last):
  File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/add.py", line 165, in <module>
    main()
  File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/add.py", line 132, in main
    meta=meta)
  File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/busco.py", line 70, in parse
    parse_busco(file, identifiers=kwargs["dependencies"]["identifiers"])
  File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/busco.py", line 37, in parse_busco
    contig_index = columns.index("Sequence")
ValueError: 'Sequence' is not in list

It looks like something should be added at line 37 that the script tries to parse, but I don't know what will be appropriate. This is what busco.py code looks like. This is the BUSCO result looks like:enter image description here Any suggestion to nano busco.py ? Thank you for your time.

busco blobtool • 204 views
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