Entering edit mode
3.2 years ago
slin023
•
0
Hello, for people who have experience with editing format of dataset and programming, this seems like a simple fix. I am using blobtool to add my busco result, but I ran into some errors:
Traceback (most recent call last):
File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/add.py", line 165, in <module>
main()
File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/add.py", line 132, in main
meta=meta)
File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/busco.py", line 70, in parse
parse_busco(file, identifiers=kwargs["dependencies"]["identifiers"])
File "/scratch/mdegenna/slin023/blobtoolkit/blobtools2/lib/busco.py", line 37, in parse_busco
contig_index = columns.index("Sequence")
ValueError: 'Sequence' is not in list
It looks like something should be added at line 37 that the script tries to parse, but I don't know what will be appropriate. This is what busco.py code looks like. This is the BUSCO result looks like:
Any suggestion to nano busco.py ? Thank you for your time.
