I am new to work on WGS/WES analysis. I have VCF files obtained from WGS already and I would like to focus on SNPs located on non-coding regions such as promoter, enhancer, and 5'/3'-UTRs, or if possible, all non-coding regions I would like to analyze.
- Is there any database, reference sequence (txt, bed whatever), or even script available to extract SNPs of non-coding region from my VCF files?
- If anyone has already posted and figured it out, please kindly let me know where the post is.
I do not want to analyze by using biased approach like focusing of the 5k -20kb upstream of genes of interest. Rather, I want to do a global analysis, therefore, I am struggling...
Thank you very much in advance. Any kind of your comments/suggestion should be helpful.