I want to call the variants of my samples from the bam file using MuSE and I need the dbSNP VCF file. I used Grch38.84 for the reference genome and I need the corresponding dbSNP file. I have some questions.
- Is there any general database for all of these files that I can download this file? because I searched a lot but I could not find it. Maybe I don't know the correct keywords.
- Should the dbSNP file correspond to the exact version of the reference fast file? even the version? (84)
- What is the 84 in Grch38.84? Why there is Grch38.p5 in some places? Can I also use the dbSNP vcf file for Grch38.p5?