TCGA capture kits VCRome
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9 months ago
enho ▴ 20

Hi all,

I am running an analysis on TCGA data and the NGS data I am using has 4 different capture kits. 2 of them are: SeqCap EZ HGSC VCRome and VCRomeV2.1-PKv1.

While I can find the bed files for SeqCap EZ HGSC VCRome, I can't find anything on VCRomeV2.1-PKv1.

Does anyone know how to get the bed file for VCRomeV2.1-PKv1?

Thanks.

tcga captureKit NGS coverage • 336 views
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Never seen it, and cannot find it right now via a search engine. You could e-mail Roche technical support.

This kit (the 'PKv1') seems to be a subset of VCRome v2.1 and relates to spike ins?

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Thanks for your reply,I'm not sure, the most I could find about this kit was in this link, but nothing more. I'm gonna email them and write the results here

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