Error in ChIPQC(samples) : Unable to process. Each bam file must be associated with at most one peakset.
0
0
Entering edit mode
10 months ago
bioinfo89 ▴ 40

Hi All,

I get this error when I run the ChIPQC package on my data (single sample). The commands are mentioned below:

## Load sample data
#View(samples)

## Create ChIPQC object
chipObj <- ChIPQC(samples, annotation="hg19")


The samplesheet.csv:

SampleID,Tissue,Factor,Replicate,bamReads,Peaks
SRR,PCa,AR,1,data/bams/SRR.sambamba.sorted.uniquemapped.bam,data/peakcalls/LNCaP_AR_macs2_peaks.narrowPeak


I am not sure what exactly am I doing wrong.

Any help will be much appreciated. Thanks!

ChIP-Seq • 616 views