Error in ChIPQC(samples) : Unable to process. Each bam file must be associated with at most one peakset.
0
0
Entering edit mode
10 months ago
bioinfo89 ▴ 40

Hi All,

I get this error when I run the ChIPQC package on my data (single sample). The commands are mentioned below:

## Load sample data
samples <- read.csv('meta/samplesheet.csv')
#View(samples)

## Create ChIPQC object
chipObj <- ChIPQC(samples, annotation="hg19")

The samplesheet.csv:

SampleID,Tissue,Factor,Replicate,bamReads,Peaks
SRR,PCa,AR,1,data/bams/SRR.sambamba.sorted.uniquemapped.bam,data/peakcalls/LNCaP_AR_macs2_peaks.narrowPeak

I am not sure what exactly am I doing wrong.

Any help will be much appreciated. Thanks!

ChIP-Seq • 616 views
ADD COMMENT

Login before adding your answer.

Traffic: 2752 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6