IPA pathway for DESeq2 result
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3.3 years ago
Rob ▴ 170

Hi friends, I want to run pathway analysis with IPA for result of DESeq2 for genes with FDR < 0.05. Which one should I use : log2FoldChange or lfcSE to run the pathway analysis? What are the difference between these two?
gene sequence • 997 views
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SE stands for standard error. You don't want that.

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Thanks swbarnes2. Isn't this shrinkage fold change?

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