plink Map change location from hg18 to hg19
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9 months ago
enci.xue96 ▴ 10

I wanted to convert the map file from hg18 to hg19. I noticed the liftoverplink on github and the Script, but I run into this : Converting MAP file to UCSC BED file... SUCC: map->bed succ Lifting BED file... sh: 1: liftOver: not found Traceback (most recent call last): File "", line 172, in <module> makesure(liftBed(oldBed, newBed, unlifted, args.chainFile, liftOverPath), File "", line 64, in liftBed for ln in myopen(params['UNLIFTED']): File "", line 34, in myopen return open(fn) IOError: [Errno 2] No such file or directory: 'lifted.bed.unlifted' root@MM-202009281221:/home/xueenci/liftOver# exit

I have noticed that someone has encountered the same problem, but I don't know how to solve it. I hope someone can help me!

liftOver plnik liftOverPlink SNP • 262 views

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