In methylation sequencing, what does BedGraph value stand for?
0
0
Entering edit mode
3.3 years ago
kwanghoon ▴ 20

I have Methylation capture seq data like BedGraph.

BedGraph is called using Bismark tool.

I can see 4 column of this file. First column is chromosome, second is start site, third is end site. fourth is values.

Does this value stand for methylation value? Like beta value of methylation array?

Thank you.

bedgraph methylaion methylation sequencing bismark • 733 views
ADD COMMENT
1
Entering edit mode

Fourth column belongs to probability scores (Methylation value) for the given position at specific chromosome.

ADD REPLY
1
Entering edit mode

Thank you devarora. Then it looks like similar as beta value.

ADD REPLY

Login before adding your answer.

Traffic: 2603 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6