Extract VCF of tumor variants from a list of SNPs
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6 months ago
vctrm67 ▴ 20

I have a list of germline SNPs. I want to get the read level information, etc. of these SNPs in the tumor BAM file and format it into a VCF (ie. to see the read level support for the germline SNPs in the tumor sample). Is there an easy way to do this?

mutect2 SNP • 162 views
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