Question: Identifying Transcription Factor Binding Sites From Chip Seq
0
gravatar for ancient_learner
6.8 years ago by
India
ancient_learner610 wrote:

hiii i have a set of filtered Mirna which we believe are important. i want to examine whether these Mirna have any TF binding sites (particularly for a protein) in <2kb region. how do i do it with the help of chip seq? Thank you in advance

chip-seq • 2.1k views
ADD COMMENTlink written 6.8 years ago by ancient_learner610

Please explain more about the chip-seq data (?) you have.

ADD REPLYlink written 6.8 years ago by Ido Tamir5.0k
0
gravatar for Davy
6.8 years ago by
Davy360
United States
Davy360 wrote:

Filter your sequence data to contain the upstream seqeunces of the mirnas you are interested in, and then use a program like MEME http://meme.sdsc.edu/meme/intro.html for either checking for known sites, or for motif discovery.

ADD COMMENTlink written 6.8 years ago by Davy360
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