Not able to annotate KGML files in CYTOSCAPE

Question

[Dr SKY]

I am trying to annotate my gene expression values into KEGG pathway diagrams for which i have taken the help of KEGG scape and cytoKEGG plugin of CYTOSCAPE. The problem that i am facing is that just after importing the KGML files which at first appears to resemble the image from KEGG in the cytoscape network window, when i try to save it as a network that pathway gets dissolved and looses all its original attributes. Its as if i have all the nodes but their identity gets lost as and when i am saving it as a network. I want to save (except JPEG)it in the exact KGML diagram format that KEGGscape plugin showed at first...I want to preserve the attributes with which the the Pathway showed up just after importing