Question: Annotating two columns at the same time
1
gravatar for Mozart
5 weeks ago by
Mozart250
Mozart250 wrote:

Hello everyone. I have two columns containing ensemble peptide ids. I was wondering whether it would be possible to annotate, with just one command line, two columns at the same time.

the reason I ask for this is because the only idea I have in mind is to run 2 merge function one right after the other – not sure this is the best thing to do?

thanks in advance

rna-seq R • 135 views
ADD COMMENTlink modified 4 weeks ago • written 5 weeks ago by Mozart250

what do you mean with annotate ?

ADD REPLYlink written 5 weeks ago by Pierre Lindenbaum134k

apologies for not making this clear. I have peptide ids and want to convert these into protein names.

ADD REPLYlink written 5 weeks ago by Mozart250

Can you include some example data, and an example of what you want the output to look like?

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by rpolicastro3.9k

Could you please illustrate what you'd like to do with some example data (and the expected output)?

ADD REPLYlink written 5 weeks ago by Dunois500

Thanks for the comments. I have a list of ids interacting somehow with another list of ids. I want to convert these two lists into gene names.

ADD REPLYlink written 4 weeks ago by Mozart250
1

Mozart : Not sure why you need it done at the same time. To remove redundancy perhaps? If you have your lists then convert them and reconcile later.

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by GenoMax96k

Thanks a lot – this clears things up.

ADD REPLYlink written 4 weeks ago by Mozart250

You haven't read the comments

ADD REPLYlink written 4 weeks ago by cpad011215k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2700 users visited in the last hour
_