Tool:Script: Getting information about SRX experiment ID from NCBI database
0
0
Entering edit mode
4 months ago

The following is the link to the script: Gist github link

Create a file named "list_of_all_srx.txt" in the same directory as the script file and this file should have a list of single SRX ID as entries in every line.

Script also generates an output file named "list_of_all_srx_with_info_on_seq_types_SRRs_title.txt" which has information on the list of SRRs, number of reads in .fastq file and sequencing type

Note: This script was tested in both Mac OS and linux OS and it requires "re" and "requests" libraries in python.

RNA-Seq rna-seq next-gen Blog Tool • 244 views
ADD COMMENT
0
Entering edit mode

Please add usage information at top of your script.

ADD REPLY
0
Entering edit mode

Thanks! I added the usage information in the script as well

ADD REPLY
0
Entering edit mode

jayeshkumarsundaram I suggest that instead of multiple posts with sparse content you make one single post, add your scripts, with usage information.

ADD REPLY

Login before adding your answer.

Traffic: 2211 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6