Tool: Script: Getting information about SRX experiment ID from NCBI database
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gravatar for jayeshkumarsundaram
6 weeks ago by
jayeshkumarsundaram0 wrote:

The following is the link to the script: Gist github link

Create a file named "list_of_all_srx.txt" in the same directory as the script file and this file should have a list of single SRX ID as entries in every line.

Script also generates an output file named "list_of_all_srx_with_info_on_seq_types_SRRs_title.txt" which has information on the list of SRRs, number of reads in .fastq file and sequencing type

Note: This script was tested in both Mac OS and linux OS and it requires "re" and "requests" libraries in python.

rna-seq tool blog next-gen • 169 views
ADD COMMENTlink modified 6 weeks ago • written 6 weeks ago by jayeshkumarsundaram0

Please add usage information at top of your script.

ADD REPLYlink modified 6 weeks ago • written 6 weeks ago by GenoMax96k

Thanks! I added the usage information in the script as well

ADD REPLYlink written 6 weeks ago by jayeshkumarsundaram0

jayeshkumarsundaram I suggest that instead of multiple posts with sparse content you make one single post, add your scripts, with usage information.

ADD REPLYlink written 6 weeks ago by ATpoint46k
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