Can't GCTA use --bgen option for MLMA?
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10 months ago
Apprentice ▴ 90

Hi.

I'm trying to do MLMA analysis by using GCTA. My imputed genotype data follows bgen format.

I did the following command. gcta64 --mlma --bgen chr12.bgen --sample chrs.sample --grm data_ld --pheno phe.txt --threads 40 --out test

However, the following error message was returned.


Accepted options: --mlma Error: invalid option "--bgen".

An error occurs, please check the options or data


Can't GCTA use --bgen option for MLMA?

I'm using gcta_1.93.2beta.

SNP • 344 views
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