Question: Download entire human rRNA sequences
0
gravatar for bioinformatics.queries
5 weeks ago by
bioinformatics.queries50 wrote:

Hello everyone

Does anyone know where and how could I download entire human rRNA unit?

Thank you so much

sequence • 148 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by bioinformatics.queries50
1

Do you mean a description of an rRNA unit that you can look up at Ensembl, or UCSC, or NCBI? Or do you mean an actual sequence, including all repeats, that someone might get and assemble from a long read sequencing technology?

ADD REPLYlink written 5 weeks ago by seidel7.4k

I need to filter the rRNA contamination from my RNA-seq data. Could you please share the link to download rRNA from Ensemble or NCBI. I know the following link rDNA but it included rDNA repeats.

ADD REPLYlink written 5 weeks ago by bioinformatics.queries50
1

That is the entire sequence of human rDNA repeat. You can search against just this copy. See more: A: how can i download human ribosomal reference ?

ADD REPLYlink written 5 weeks ago by GenoMax96k
1

This link may help you. Also, look at this paper

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by dare_devil1.4k

Thank you so much. I was able to download from the ensemble.

ADD REPLYlink written 5 weeks ago by bioinformatics.queries50
1

You can upvote the answer, if that helped you.

ADD REPLYlink written 5 weeks ago by dare_devil1.4k
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