Entering edit mode
3.2 years ago
daffodil
▴
10
Hi everybody I used picard vcf filiter using this command java -jar /home/apps/picard/picard.jar FilterVcf -I 1245.marked_duplicates.vcf -O filtered.vcf --MIN_DP 9
after I check both files before and after filtering however the first file is = 67M and the filtered file is 74 M it should be appreciated if you tell me why it appends?
Try
wc -lon both files to check number of lines ? Try setting a higher --MIN_DP ? Maybe it reformats instead of appending ?what is the output of
file 1245.marked_duplicates.vcf filtered.vcf-I 1245.marked_duplicates.vcf -O filtered.vcf
what is the output of
file 1245.marked_duplicates.vcf filtered.vcf