WGS Metagenomics mapping for functional annotation (KEGG/ other database)?

Question

[MSRS]

Hi, I want to annotate functional data from whole genome metagenomics. Is there any existing pipelines/tools to build KEGG database/other for functional annotation?

Thanks in advance.

[Fatima]

Hi, you can use metaCyc. Check Fun4me for more information.

https://link.springer.com/protocol/10.1007/978-1-4939-7015-5_3

https://sourceforge.net/projects/fun4me/

[cschu181]

You can use eggnog-mapper (also available as a standalone, e.g. via (bio-)conda).

[MSRS]

Thank you very much for your contribution here. I also found FMAP.