Question

Annotating tsv files

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4.8 years ago

evelena02 • 0

Hello,

I would like to know what would be the best ways to annotate peaks (currently in range format) in a tsv file. Using a tool in the command line or R studio would be best.

Many thanks in advance, e

RNA-Seq ChIP-Seq R • 1.2k views

ADD COMMENT • link updated 4.8 years ago by Pierre Lindenbaum 166k • written 4.8 years ago by evelena02 • 0

score 0 · Answer 1 · 2021-02-05

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4.8 years ago

Pierre Lindenbaum 166k

bedtools intersect

ADD COMMENT • link 4.8 years ago by Pierre Lindenbaum 166k

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I think bedtools is used with bed files, would anything work with tsv peak coverage files?

ADD REPLY • link 4.8 years ago by evelena02 • 0