R error: could not find function "makeTxDbFromUCSC"
1
1
Entering edit mode
5 months ago
xiaoleiusc ▴ 70

Dear All,

I wonder if R stops support for "makeTxDbFromUCSC" function? I tried many times but keep failing with the error message below:

> txDB <- makeTxDbFromUCSC(genome = "hg19", tablename = "ensGene")

Error in makeTxDbFromUCSC(genome = "hg19", tablename = "ensGene") : could not find function "makeTxDbFromUCSC"

Any input is appreciated.

Thanks,

Xiao

R RNA-Seq • 175 views
ADD COMMENT
1
Entering edit mode
5 months ago
zx8754 10k

Did you load the library?

library(GenomicFeatures)

See possible solutions at SO:

ADD COMMENT
0
Entering edit mode

Hi, zx8754, I did not load the GenomicFeatures library, after I loaded it according to your post, I could run the makeTxDbFromUCSC function in R.

I really appreciate your help.

Best,

Xiao

ADD REPLY

Login before adding your answer.

Traffic: 1275 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6