R error: could not find function "makeTxDbFromUCSC"
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19 months ago
xiaoleiusc ▴ 110

Dear All,

I wonder if R stops support for "makeTxDbFromUCSC" function? I tried many times but keep failing with the error message below:

> txDB <- makeTxDbFromUCSC(genome = "hg19", tablename = "ensGene")

Error in makeTxDbFromUCSC(genome = "hg19", tablename = "ensGene") : could not find function "makeTxDbFromUCSC"

Any input is appreciated.

Thanks,

Xiao

R RNA-Seq • 434 views
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19 months ago
zx8754 11k

Did you load the library?

library(GenomicFeatures)

See possible solutions at SO:

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Hi, zx8754, I did not load the GenomicFeatures library, after I loaded it according to your post, I could run the makeTxDbFromUCSC function in R.

I really appreciate your help.

Best,

Xiao

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