Convert Abi-Solid Reads To Colored Space Fastq
1
0
Entering edit mode
9.3 years ago
Prakki Rama ★ 2.5k

Hi all,

Is there any tool or script to convert ABI SoLiD data (csfasta +qual) to colored space FASTQ reads. There is an option in GALAXY but it is too difficult to upload loads of data and download it. Would appreciate your help. Thanks in advance.

solid fastq • 3.9k views
ADD COMMENT
4
Entering edit mode
9.3 years ago

The bfast aligner has a tool called solid2fastq in the scripts directory, this will allow you to run perform the conversion locally. This is probably what Galaxy uses as well.

There are python scripts mentioned in the Transforming and manipulating color space reads tutorial with code as well.

ADD COMMENT
0
Entering edit mode

Thank you Istavan.

ADD REPLY

Login before adding your answer.

Traffic: 1029 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6