CIBERSORT: Errors were encountered in input files, run aborted:
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9 months ago
dare_devil ★ 1.5k

I uploaded my file with 800 samples and 24368 genes as mixture in cibersort. When I'm executing the cibersort, it gives following error:

Errors found in file dare_devil_data:
There are missing/invalid data points on line(s): 
1136 1246 1325 24369 

data present in line 1135, 1136, 1137

CD299155    5.811753045   5.912369276   5.722461877
TMPRSS7     5.526562877   4.994386556   5.220927718
KRTAP2-2    5.195005553   5.266481855   5.091549913

data present in line 1245, 1246 , 1247

AJ292264    5.840011828   6.081866372   5.636046351 
SLC25A19    6.69308641    6.117585334   6.334975271 
DDIT4L      8.77241093    6.221155294   6.683983895 
bioinformatics deconvolution cibersort • 672 views
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Could the same name be used multiple times? Maybe try:

grep TMPRSS7 dare_devil_data
grep SLC25A19 dare_devil_data
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I checked this, there are no duplicate entries in the gene list

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There are four columns in the lower but only three in the upper example.

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@ ATpoint

There are about 800 columns. I just mentioned few columns from the position.

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