Entering edit mode
3.2 years ago
mike.rightmire
•
0
We're working with the nomenclature found at Varnomen
The question is; is there a fully reliable algorithm for determining the sequence type (I.e. g., m., c. and n. for genomic, mitochondrial, coding DNA, and non-coding DNA.)
So far, I basically only have...
if chromosome in [1-23, X, Y] and position is integer:
then "g"
if chromosome==M:
then "m"
if [referencing annotation transcripts]:
then "c"
This seems certainly incomplete, and oversimplified :/