I have loaded an affyBatch object via R and I am encountering issues when assigning the CDF environment
set <- ArrayExpress(input="E-MEXP-2802") norm.full<-rma(set) set@cdfName<-paste("MoGene-1_0-st-v1-Mm-ENSG") # assign cdf
Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15 Error in getCdfInfo(object) : Could not obtain CDF environment, problems encountered: Specified environment does not contain MoGene-1_0-st-v1-Mm-ENSG Library - package mogene10stv1mmensgcdf not installed Bioconductor - mogene10stv1mmensgcdf not available
I have tried to install the mogene10stv1mmensgcdf package from different mirrors or saved locally on my computer from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp.
Error: (..) is not available (for R version 2.15.1)
I have updated R from 1.15.0 and the installed packages (on MacOs) . I have also tried in windows as well, R 2.14. Nothing seems to work..
Is there perhaps an alternative to this?
R version 2.15.1 (2012-06-22) Platform: x8664-apple-darwin9.8.0/x8664 (64-bit)
locale:  C/en_US.UTF-8/C/C/C/C
attached base packages:  grid parallel stats graphics grDevices utils datasets methods base other attached packages:  mogene10stv1cdf_2.10.0 affy_1.34.0 ArrayExpress_1.16.0 AnnotationDbi_1.18.1  Biobase_2.16.0 getopt_1.17 Biostrings_2.24.1 IRanges_1.14.4  BiocGenerics_0.2.0 gridExtra_0.9 ggplot2_0.9.1 BiocInstaller_1.4.7
[ 13] cluster1.14.2 R2HTML2.2 plyr1.7.1 nnet7.3-4
 nlme3.1-104 DBI0.2-5
loaded via a namespace (and not attached):
 MASS7.3-19 RColorBrewer1.0-5 RSQLite0.11.1 XML3.9-4 affyio1.24.0
 colorspace1.1-1 dichromat1.2-4 digest0.5.2 labeling0.1 lattice0.20-6
 limma3.12.1 memoise0.1 munsell0.3 preprocessCore1.18.0 proto0.3-9.2
 reshape21.2.1 scales0.2.1 stats42.15.1 stringr0.6 tools2.15.1