mummerplot - providing ranges for x and y axes
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8 months ago
langziv ▴ 20

Hi.

I'm trying to provide the ranges as explained in the mummer documentation, yet the ranges are not shown on the graphs.

I tried nucmer as well as mummer and didn't get the desired result.

The commands I used:

/nucmer --minalign=100 -p <output-name> <query> <reference>
/delta-filter -i 80 -g <input.delta> > <filtered_output.delta>
/mummerplot -x "[0,{x}]" -y "[0,{y}]" --png --layout --color -p <output-name>

The x and y values are the sum of sequences lengths that were calculated with Biopython from the multi fasta files.

I tried using mummer instead of nucmer and then mummerplot as well:

/mummer -mumreference <reference> <query> > <output>
/mummerplot --png --color -p r_btcaA1 -Q <fasta-of-query> -R <fasta-of-reference>

Help please

mummer nucmer mummerplot • 345 views
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