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• ICGC file ids
  Hi, I downloaded files from [icgc data portal][1] using the icgc-get tool and icgc-get manifest I...
• How to work with big data from ICGC
  Hi all, I have downloaded 56G data from ICGC and I am having trouble analyzing it on R (Although...
• ICGC/TCGA clinical data. Specimen_interval longer than donor survival time?
  Suppose one wanted to do survival analysis on any of the variety of data available through ICGC/T...
• Mutation data from ICGC
  I want to download the mutation data of 50 specific genes by individuals from ICGC data. Is it po...
• How to get annotation of miRNAs expression from ICGC ?
  Hi all, I have downloaded miRNA exprression level from ICGC, but does not have miRNA IDs, just i...
• Downloading controlled access data from ICGC for specific ID?
  I remember there are only few posts regarding the controlled access data download from ICGC and s...
• ICGC data ontology
  Hello everyone, TCGA provides sample preparation and sequencing information in MAGE TAB format a...
• Cancer DNA sequences
  Hi, How can I find DNA sequences from cancer patients with precise information about the donor su...
• Download ICGC gene expression data
  Can I download gene expression data from ICGC? If so, how? Do I need controlled access?
• AND filter in ICGC data portal?
  Hi all I'm wondering whether it is possible to filter donors in ICGC's data portal based on the ...
• Multiple Sequence Alignment With Human Lung Infecting Coronaviruses
  I pulled all of the human lung infecting coronaviruses on the ncbi viral variation database and r...
• How to prepare a BED file to make a sashimi plot in IGV?
  Using bowtie and a number of scripts, I have determined the position of donor and acceptor sites ...
• How to download advance search results from ICGC data portal?
  Hi, I was trying to download data from ICGC data portal, specifically this result: https://dcc.i...
• Downloding only RNA-Seq Raw counts data from ICGC
  Hi, I wanted to download RNA-Seq raw counts data from ICGC with samples as columns and gene_symb...
• Can I add information to FASTA/genbank/text files without going through every file one by one?
  Hello, I am new to bioinformatics and coding. I have fasta files from ~900 patients for 3 genes ...
• Accessing controlled cancer data
  1. I have recently gained access to ICGC portal and EGA portal. Do I need to get access to the GD...
• Differential Expression from Quantile-Norm Data
  Hi everyone, I'm a newbie to analyzing RNAseq data and wanted to get input on how to proceed for...
• ICGC simple somatic mutations
  I have downloaded ICGC donor id DO52673, It contains total nine files, FI675848, FI666508, FI3853...
• How to get short and sweet gene names/description for gene IDs?
  I am working on Arabidopsis thaliana omics project. How can I get short and proper gene descripti...
• Data retrieval icgc
  Is there a command line tool or r package to efficiently retrieve datasets from ICGC?