Hello, I downloaded LncTar package from http://www.cuilab.cn/. I want to analyse RNA-RNA interaction. For this, I formatted my two input RNA fasta files according to the manual and examples provided with the LncTar package i.e.,
>RNAid1 Sequence in one line >RNAid2 Sequence in one line
But, when I try running the command:
perl LncTar.pl -p 1 -l RNAfile1 -m RNAfile2 -d -0.1 -s T -o output.txt
I get the following error:
the format of file is error, Please check! The name and the sequence do not put in a row!
I have checked my input file multiple times, it is formatted according to the software's requirement. For your reference, both of my input files look like this:
>Cre00001921 ATGGCTCCTGGTATAGGAAGCTAATATCTTTCCTTTTTAAGGTGGGGCTAGTTCAAAG >Cre00000880 GAATGACGCAAGCTCCTCTCTTCAATAAAGattttgaaCACAAATAATGGAATAAATCG
but I am clueless regarding this error. Can anyone help me in resolving this? Any assistance would be greatly appreciated. Thank you.