I am mid-way through my university project, and I have run into an issue. I have a long list of around 1000 proteins that I wanted to analyse in STRING, however, my list is too large. I decided to try and utilise Cytoscape (and downloaded the stringApp), but the networks generated are still very messy. I've attached a screenshot: https://i.stack.imgur.com/KUIE4.jpg. Is there any way to improve the presentation of the network by downloading any Cytoscape apps or by tweaking the settings? I am very much a novice when it comes to Cytoscape, even after watching quite a few tutorials online.
Thanks in advance