Tool:I made QMplot: a python library and tools of generating high-quality manhattan and Q-Q plots for GWAS data
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9 weeks ago

qmplot is a handy, user-friendly Python library and tools that allows for quick and flexible of generating publication-ready manhattan and Q-Q plots directly from PLINK2 association output file or any data frame with columns containing chromosomal name, chromosomal position, P-value and optionally the name of SNP(e.g. rsID in dbSNP).

The github repo: https://github.com/ShujiaHuang/qmplot

And tutorial: https://nbviewer.jupyter.org/url/github.com/ShujiaHuang/qmplot/blob/main/docs/tutorial.ipynb

Manhattan plot

Q-Q plot

GWAS visualization genome Python Manhattan Plot Tool • 314 views
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