Breast cancer expression data with subtype information
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7 months ago
sabin ▴ 40

Hi all, I'm working on breast cancer data and in particular i am interested in the sample subtype. I downloaded the BRCA dataset from TCGA, where i got both RNASeq read count matrix and the matrix with clinical information with the variable "subtype" that i need (in this case the subtypes are LuminalA, LuminalB, Basal and Her). Now i need to get another dataset that i can use to compare to the TCGA data, but i can't find it anywhere. I need a RNASeq read count matrix, but most importantly, i need to have the information about the subtype of the samples. It looks like there are no data repositories that offer this variable. Do you know where can i download such data? Thanks a lot!

breast cancer data subtype expression dataset • 250 views
Entering edit mode

Hi, Can you provide that source links from where you got the data mentioned?


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