Question: Human Expression Compendium?
1
gravatar for Adrian
7.1 years ago by
Adrian680
Cambridge, MA
Adrian680 wrote:

Are there any large, already-normalized compendia of human gene expression data available for download? I know I could obtain data from GEO or ArrayExpress, but I'd like to try something out without having to deal with choosing which experiments to include and normalization.

geo expression microarray • 1.6k views
ADD COMMENTlink modified 7.1 years ago by Ryan Dale4.8k • written 7.1 years ago by Adrian680
1
gravatar for Ryan Dale
7.1 years ago by
Ryan Dale4.8k
Bethesda, MD
Ryan Dale4.8k wrote:

This 2011 NAR article by McCall et al describes a "barcode" method for looking at normalized expression across tissue types in human. It renders expression down to a binary yes/no for each tissue type. A normalized-and-processed data set can be downloaded from the authors' site (check the "transcriptomes" section), which I've found it really useful for initial exploratory analyses.

Additionally, the BioGPS downloads page has some data sets available that might be of interest to you.

ADD COMMENTlink written 7.1 years ago by Ryan Dale4.8k
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