Entering edit mode
3.2 years ago
445014525
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0
An error occurred while running crisp for calling variant.
lzw@LAPTOP-474SHEFV:/mnt/e/BS/SH11$ /mnt/e/BS/CRISP-122713/CRISP --bams /mnt/e/BS/SH11/SH11_dup.bam --ref /mnt/e/毕设数据/SH11/GCF_000002495.2_MG8_genomic.fna --mmq 40 --minc 10 --VCF SH11_variant.vcf
CRISP options: QVoffset 33 min_base_quality 13 min_mapping_score 40 max_permutations 20000 poolsize 2 CT-pvalue-thresh -3.5 QV-pvalue-thresh -5.0
reading fasta index file /mnt/e/BS/SH11/GCF_000002495.2_MG8_genomic.fna.fai ... fasta file /mnt/e/BS/SH11/GCF_000002495.2_MG8_genomic.fna has 53 chromosomes/contigs
processing 5610956 bamfiles: .....
poolsize for each sample is 2
open: No such file or directory
unable to open the BAM file
But there is BAM file in my file path
