determine the robustness of single-cell clusters
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Entering edit mode
16 months ago
Maria17 • 0

Hi All,

I'm working on single-cell RNA seq data mostly with the Seurat package. I need to assess cluster stability and determine the robustness of single-cell clusters but I could not find that many tools for this purpose.

Any recommendation and tools in R (preferably applicable for Seurat object or Sce object) would be appreciated. Thanks.

Maria

clustering RNA-Seq rna-seq R Seurat • 575 views
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Entering edit mode
16 months ago
fracarb8 ▴ 810

scclusteval (https://github.com/crazyhottommy/scclusteval) does exactly that.

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