determine the robustness of single-cell clusters
1
0
Entering edit mode
6 weeks ago
Maria17 • 0

Hi All,

I'm working on single-cell RNA seq data mostly with the Seurat package. I need to assess cluster stability and determine the robustness of single-cell clusters but I could not find that many tools for this purpose.

Any recommendation and tools in R (preferably applicable for Seurat object or Sce object) would be appreciated. Thanks.

Maria

clustering RNA-Seq rna-seq R Seurat • 123 views
ADD COMMENT
1
Entering edit mode
6 weeks ago
fracarb8 ▴ 130

scclusteval (https://github.com/crazyhottommy/scclusteval) does exactly that.

ADD COMMENT

Login before adding your answer.

Traffic: 1650 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6