Alamut batch vs free annotation tools like VEP
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7 months ago
quentin54520 ▴ 20

Hello all,

we are considering purchasing an alamut batch license for variant annotation. I would like to have your opinion knowing that it is very expensive, I wonder what it really brings compared to VEP (with the use of plugin to add the effect on the splicing for example).

genome • 370 views
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27 days ago
Keith • 0

Hello, I work for a large UK health organisation and we use Alamut batch. I am currently investigating alternative to Alamut batch as It may not be maintained by the company for much longer. Have you manage to find any alternative I would be interested in you opinion.

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Hello,

I use ensembl variant effect predictor. There are a lot of possible annotations with a lot of plugin. It's quite complicated to install and get all the require data, but then it's a very good tools.

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