Getting 0 bytes or 1 line from galaxy
0
0
Entering edit mode
5 weeks ago

Hi,

I have an existing dataset from nanopore run in fast5 format. I'm using GALAXY to convert it into fastq format. The tools which I've trialled from the tools list are : 1) extract fastq in tabular format from a set of fast5 files and 2) extract read in fasta or fastq format from nanopore files.

I got either 1 line or 0 bytes from these runs,,,no output.

Does anyone has any idea why? or which step did i miss or input the wrong thing?

Thank you.

sequence • 132 views
ADD COMMENT
0
Entering edit mode

galaxy outputs the logs, for each job. Look at the logs.

ADD REPLY
0
Entering edit mode

Hi,

I'll have a look at it.

Thank you.

ADD REPLY
0
Entering edit mode

Galaxy related questions are best posted on their help forum: https://help.galaxyproject.org/

ADD REPLY
0
Entering edit mode

Hi,

Noted!

Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 1763 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6