getting fastq ID with SNPs
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3.4 years ago
bitpir ▴ 240

Hi! I was wondering if anyone knows how to bioinformatically get fastqID with mutations? I want to extract the info that was displayed in Genome browser, fastqID that has SNP compared to reference.

Thanks for the help!

something like this

SNP genome browser fastq • 576 views
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Do you want to do that programmatically or just for a few ID's?

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Programmatically. I just need the readname and the nucleotide that it is calling at a particular coordinate.

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