Processing of shotgun metagenome data
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9 months ago

Hello, I have a whole metagenome shotgun data processed by trimmomatic, metaspades and bowtie. Please tell me what to do next? It is necessary to find out what organisms are in the samples, as well as to search for genes. Thank you for your answer.

metagenome genome • 384 views
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Entering edit mode
9 months ago
Carambakaracho ★ 2.9k

some suggestions you could go with

Then you could head down the rabbit hole of functional annotation transfer to figure out what your microbiome is capable of (the MicrobeAnnotator published in Jan 2021 looks promising).

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