Miranalyser For Mirna Prediction
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10.0 years ago

How to make bowtie index from transcriptome sequence for miRNA prediction from miRAnalyser tool?

mirna prediction • 2.2k views
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Perhaps I could help you, but I don't get your question. Can you give some more details, what you have and what you want to have?

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4.8 years ago

I have not used miRAnalyser but if you want to make bowtie index for transcriptome sequences (fasta format), use bowtie-build function of bowtie (http://bowtie-bio.sourceforge.net/manual.shtml#the-bowtie-build-indexer). same is true if using bowtie2 instead of bowtie. General usage is bowtie-build [options]* <reference_in> <ebwt_base> You can use index generated in this way for any of the tools that uses bowtie.