how to filter multi-KEGG_ko mapping after functional anntotion using eggnog-mapper
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9 weeks ago
MEITUO ▴ 10

hi everyone!

I had annotated my gene using "eggnog-mapper" with '-m diamond", and got the "gene_res.emapper.annotations" file. but there has one question, when i see the "KEGG_ko" column. i found, one query gene maybe hit different ko number, like:

544-M.-qc_NODE_1191_length_20492_cov_5.830846_8_1   ko:K05589,ko:K13052

544-M.-qc_NODE_1191_length_20492_cov_5.830846_9_1   ko:K07570,ko:K07571

544-M.-qc_NODE_1191_length_20492_cov_5.830846_10_1  ko:K04075,ko:K15780

544-M.-qc_NODE_1191_length_20492_cov_5.830846_11_1  ko:K00760,ko:K15780

gene "544-M.-qc_NODE_1191_length_20492_cov_5.830846_8_1" mapped on "ko:K05589" and "ko:K13052"

, so how can i filter them?

sequencing gene next-gen Tool • 120 views
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