how to filter multi-KEGG_ko mapping after functional anntotion using eggnog-mapper
0
0
Entering edit mode
17 months ago
MEITUO ▴ 10

hi everyone!

I had annotated my gene using "eggnog-mapper" with '-m diamond", and got the "gene_res.emapper.annotations" file. but there has one question, when i see the "KEGG_ko" column. i found, one query gene maybe hit different ko number, like:

544-M.-qc_NODE_1191_length_20492_cov_5.830846_8_1   ko:K05589,ko:K13052

544-M.-qc_NODE_1191_length_20492_cov_5.830846_9_1   ko:K07570,ko:K07571

544-M.-qc_NODE_1191_length_20492_cov_5.830846_10_1  ko:K04075,ko:K15780

544-M.-qc_NODE_1191_length_20492_cov_5.830846_11_1  ko:K00760,ko:K15780

gene "544-M.-qc_NODE_1191_length_20492_cov_5.830846_8_1" mapped on "ko:K05589" and "ko:K13052"

, so how can i filter them?

Tool next-gen gene sequencing • 348 views
ADD COMMENT

Login before adding your answer.

Traffic: 1486 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6