Annotation of results from CD-HIT web server
1
0
Entering edit mode
7 months ago

A lot of output files are generated as a result of cd-hit web server while checking for removal of redundant sequences. Which output file should I consider to visualize the results. How to open the output file.

CD-HIT • 197 views
ADD COMMENT
0
Entering edit mode

Did you go through the documentation (https://github.com/weizhongli/cdhit/wiki)? It helps if you could post the output files you got and what you are looking for from the analysis. All output files are text files. Open it with text processors such as notepad++, st3.

ADD REPLY
0
Entering edit mode
7 months ago
Mensur Dlakic ★ 14k

It depends what you are trying to visualize. There are only two output files when you run it locally: a cluster (.clstr) file and a fasta file with non-redundant sequences. If you need to explore clusters, Joe has a parser (parseCDHIT.py) among his tools.

ADD COMMENT

Login before adding your answer.

Traffic: 1120 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6