A lot of output files are generated as a result of cd-hit web server while checking for removal of redundant sequences. Which output file should I consider to visualize the results. How to open the output file.
It depends what you are trying to visualize. There are only two output files when you run it locally: a cluster (.clstr) file and a fasta file with non-redundant sequences. If you need to explore clusters, Joe has a parser (parseCDHIT.py) among his tools.