Genome sequence upload from NCBI in galaxy for RNA-seq data analysis
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3.3 years ago

I want to upload the genome of camellia sinensis in fasta file into galaxy from NCBI datasets, please help me as I am a beginner. Ref-seq id is- GCF_004153795.1 Here is the NCBI link- https://www.ncbi.nlm.nih.gov/datasets/genomes/?acc=GCA_013676235.1&term=&utm_source=assembly&utm_medium=referral&utm_campaign=KnownItemSensor:org I also unable to upload the genome of it using weblink into ftp fies in galaxy, I have pasted the following link there but it's cannot fetch it. https://www.ncbi.nlm.nih.gov/datasets/genomes/?acc=GCA_013676235.1&term=&utm_source=assembly&utm_medium=referral&utm_campaign=KnownItemSensor:org

With regards Thanks

RNA-Seq next-gen alignment genome • 566 views
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I don't think you can directly paste links for NCBI datasets in Galaxy to download the data.

Please post this question in Galaxy help forum for prompt response: https://help.galaxyproject.org/

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