Data Comparison in python
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7 months ago

Can someone tell me how to determine whether my metagenomic and metatranscriptomic data have the same species or not?

sequencing next-gen sequence snp gene • 215 views
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I think the following link can be useful

A: Finding species matching fastq reads

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7 months ago
Mensur Dlakic ★ 14k

First you do binning of your sequences, followed by phylogenomic classification. If you have never heard about or done either of these two things, it may be easier to do as simple BLASTn search of the two groups of sequences and check how many of them have high-identity hits.

By the way, highly uninformative title.

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